Documentation and Source Code

Documentation Mapping

	EMOD	malariasimulation	OpenMalaria
Malaria model	model-overview	Model	openmalaria/wiki
Time & simulation setup	parameter-configuration-setup software-serializing-pops	run simulation set equilibrium	modelTimeUpdates
Human demography & population dynamics	parameter-configuration-population	Demography	ModelDemography
Vector model	vector-model-overview vector-model-transmission	Mosquito biology	ModelMosqPopDynamics mosquito-lifecycle-and-behaviour
Larval model	vector-model larval-habitat	Carrying capacity	ModelMosqPopDynamics
Climate & seasonality	vector-model climate-demographics	seasonality	ScenarioTransmission
Malaria transmission	malaria-model-overview	Human biology	ScenarioTransmission
Within-host dynamics	malaria-model infection-immunity	Human biology	ModelWithinHost
Disease progression	malaria-overview	Human biology	ModelClinical
Symptoms & Diagnostics	malaria-model symptoms-diagnosis	Human biology	Diagnostics
Health system & case management	malaria-model antimalarial-drugs	Treatment	ScenarioHealthSystem
Interventions	vector model scenarios malaria model scenarios	Vignettes	ModelInterventions
Stochastic Variation	parameter-configuration-setup	Stochastic_variation
Parameter & model uncertainty	software-parameter-sweep	Parameter variation	specification-of-model-variants